Search Constraints
1 - 8 of 8
Number of results to display per page
Search Results
-
- Description:
- The provided Bash scripts are used to convert raw magnetic resonance imaging (Magnetic Resonance Imaging, MRI) data from the Digital Imaging and Communications in Medicine (DICOM) standard format into a Brain Imaging Data Structure (BIDS)-compliant dataset. The scripts convert DICOM files into the Neuroimaging Informatics Technology Initiative (NIfTI) format, which can be used for preprocessing MRI data. In addition to the NIfTI files, the conversion also generates the metadata required by the BIDS standard. Dataset quality and compliance can be checked using a BIDS validator (e.g., https://bids-standard.github.io/bids-validator/). The two scripts are adapted for different experimental sessions: script_dcm2nii_S1.sh is used for data from the first session (S1), while script_dcm2nii_S2.sh is used for the second session (S2). The scripts differ in that S2 additionally processes diffusion-weighted imaging (DWI) data. Both scripts were developed as part of my own work with my individual MRI data. If you want to use them on your own data, you may need to adjust the scripts to match your raw data’s naming conventions. For more information, see the ReadMe file.
- Keyword:
- NIfTI (Neuroimaging Informatics Technology Initiative), conversion, Bash script, DICOM (Digital Imaging and Communications in Medicine), and BIDS (Brain Imaging Data Structure)
- Publisher:
- Language:
- English
- Date Uploaded:
- 2026-01-14
- Date Modified:
- 2026-01-20
- License:
- MIT License
- Resource Type:
- Software
-
- Description:
- This R script was developed to “translate” movement log files from a navigation task (path integration) experiment into so-called 'event tables'. These event tables summarize the recorded movements and can be used for further analyses, for example, to synchronize movement logs with brain activity. The script processes all CSV log files in a specified folder, classifies movement types, groups consecutive events, calculates onset, duration, and angles, and generates both individual and combined master event tables. Sample data are provided to test the script, though path adjustments are required. For more information, see the ReadMe file.
- Keyword:
- RStudio script, Movement log, and Event Table
- Publisher:
- Language:
- English
- Date Uploaded:
- 2026-01-14
- Date Modified:
- 2026-01-19
- License:
- MIT License
- Resource Type:
- Software
-
Traversed Path Visualization
User Collection
- Description:
- Visualizes participant navigation trajectories from virtual VR path integration experiments, showing target locations, traversed paths, orientation arrows, and drop error distances in RStudio.
- Keyword:
- RStudio script, path visualization, and path integration
- Language:
- English
- Date Created:
- 14.01.2026
- Resource Type:
- Software
0Collections1Works -
InnerMap - Software
User Collection
- Description:
- Software created within the ERC project "InnerMap"
- Resource Type:
- Software
3Collections2Works -
- Description:
- Version 1.0 of the Unity Experiment Toolbox (UNEXT) designed to support the creation of monitor- or VR-based cognitive and spatial experiments in the Unity game engine. , Optimized for Unity version 6. , and See the manual for the description of the toolbox variants, the installation process, main functions and demo scenes.
- Keyword:
- Experiment Design, Unity, and Game Engine
- Publisher:
- Date Uploaded:
- 2025-07-22
- Date Modified:
- 2026-02-05
- License:
- MIT License
- Resource Type:
- Software
-
Unity Experiment Toolbox (UNEXT)
User Collection
- Description:
- The Unity Experiment Toolbox (UNEXT) provides features to support the design of cognitive and spatial experiments with the game engine Unity.
- Keyword:
- Unity, Toolbox, Experiment Design, and Game Engine
- Resource Type:
- Software
0Collections1Works -
- Description:
- Diese Software dient zum Erstellen computergenerierter Hologramme für die holographische Strahlformung von Laserstrahlen mittels Spatial Light Modulator. Zudem unterstützt die Software die Ansteuerung und Synchronisation der Laborhardware. Version 2.3 der Hologrammsoftware, letzte Änderung 17.10.2024 and Die Software wurde für Experimente bzw. Simulationen mehrerer Veröffentlichungen eingesetzt, u.a. Marx, Jan, Felix Behlau, Damian Haske, Cemal Esen, und Andreas Ostendorf. „Two-Photon Polymerization Based Fabrication of Millimeter-Sized Precision Fresnel Optics“. Applied Optics 63, Nr. 24 (8. August 2024): 6495–6503. https://doi.org/10.1364/ao.531069 Marx, Jan, Cemal Esen, Christian Lutz , Ralf Hellmann, und Andreas Ostendorf. „Holographic Tuning of Physical Axicons“. In LiM 2023 Proceedings. Hannover: Wissenschaftliche Gesellschaft Lasertechnik und Photonik e.V. (WLT), 2023. https://wlt.de/sites/default/files/2023-09/Contribution_154.pdf. Marx, Jan, Christian Lutz, Ralf Hellmann, und Cemal Esen. „Holographic Multi-Spot Generation for Ultra-Short Pulse Bessel Beam Processing of Stainless Steel“. In 12th CIRP Conference on Photonic Technologies [LANE 2022], herausgegeben von M. Schmidt, F. Vollertsen, und B. M. Colosimo, 111:648–52. Amsterdam: Elsevier, 2022. https://doi.org/10.1016/j.procir.2022.08.003
- Keyword:
- Hologram Calculation and Laboratory Control
- Publisher:
- Language:
- English and German
- Date Uploaded:
- 2024-10-17
- Date Modified:
- 2025-02-19
- License:
- MIT License
- Resource Type:
- Software
-
LAT Hologramm Software
User Collection
- Description:
- Diese Software dient zum Erstellen computergenerierter Hologramme für die holographische Strahlformung von Laserstrahlen mittels Spatial Light Modulator. Zudem unterstützt die Software die Ansteuerung und Synchronisation der Laborhardware.
- Keyword:
- Laboratory Control and Hologram Calculation
- Publisher:
- Applied Laser Technologies, Ruhr University Bochum
- Language:
- German and English
- Date Created:
- 17.10.2024
- Resource Type:
- Software
0Collections1Works